About

About Us

Multiscale molecular simulation of receptor-ligand recognition

  • Homology modelling
  • Diverse molecular dynamics simulations (SMD, ASMD, REMD etc.)
  • Large amplitude flexible changes (hole), Prediction of drug action site (Druggui)
  • Free energy calculations (FEL, MM/PBSA, SIE)
  • MD simulation of membrane proteins (building membrane via VMD, AMBER force field, NAMD, AMBER analysis)
  • Structural and motion prediction (Alpha-fold, Swiss model, etc.)
  • Coarse-grained models (GNM, ANM, aANM; Prody)

Drug design, synthesis and activity assessment targeing important receptors

  • Bioinformatics
  • Conservativeness analysis of structural domains
  • 2D-QSAR, 3D-QSAR
  • Pharmacophore
  • ADMET assessment
  • Network pharmacology - Molecular Docking - MD Simulation - Mechanism of Action
  • Artificial intelligence based drug molecular design

Personalized database construction and platform application

  • Personalized target database (monkey pox ORF database); personalized small molecule database (microbial secondary metabolite database, etc.)
  • Machine learning in database analysis (traditional machine learning: support vector machines; deep learning: convolutional neural networks, random forests, recurrent neural networks, etc.)
  • Drug screening server construction
  • Database analysis (Bayesian classification, ADMET prediction)
  • Statistical ecology (structural biology information-driven AFT toxicity mechanism studies)

Functional molecular design and synthesis of luminescent and catalytic materials

  • Quantitative calculations of molecules for luminescent and catalytic materials
  • Property prediction of molecules (structure optimization, weak interactions, etc.)
  • Mechanisms of enzyme-catalyzed reactions, applied studies of luminescence mechanisms (excited states)
  • Screening and design of specific molecules (surfactants, material molecules, etc...) using MS
  • QM/MM calculations

Medicinal and edible plants resources development, and food enzymology research

  • Protein modification
  • Modification site identification
  • Personalized customized database on toxicity and active substance
  • Research in the food field: MC analysis (crystal ball), toxic substance, dietary exposure, cancer models
  • Design, synthesis and activity evaluation of low toxicity inhibitors against pathogenic bacteria
  • Toxicity mechanism analysis

JOIN

JOIN US

We warmly welcome undergraduate, master's and PhD students who are interested in drug design, computational biology, molecular simulation and cheminformatics to join us.

Contact: Jianping Hu

Address: Chengdu University, SuZhou Vocational University

Tel: +137 0809 1794

E-mai: 452856829@qq.com